Construction of Genetic Relationship Matrices (GRMs)

ثبت نشده
چکیده

Two GRMs were fitted using the method created by Zaitlen et al (2013). The first GRM comprised of pairwise relationship coefficients of all individuals in the sample. The second GRM included off-diagonal elements of pairs of individuals who has a relationship coefficient < 0.05 set to 0. Assuming inbreeding had not taken place, the second GRM excluded pairs of individuals with a most recent common ancestor of approximately four generations distant. This method has been found to account for potential upward biases due to excessive relationships which allows for the inclusion of closely and distantly related individuals in genetic analyses

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Optimized Use of Low-Depth Genotyping-by-Sequencing for Genomic Prediction Among Multi-Parental Family Pools and Single Plants in Perennial Ryegrass (Lolium perenne L.)

Ryegrass single plants, bi-parental family pools, and multi-parental family pools are often genotyped, based on allele-frequencies using genotyping-by-sequencing (GBS) assays. GBS assays can be performed at low-coverage depth to reduce costs. However, reducing the coverage depth leads to a higher proportion of missing data, and leads to a reduction in accuracy when identifying the allele-freque...

متن کامل

Relationship among AFLP, RAPD marker diversity and Agromorphological traits in safflower (Carthamus tinctorius L.)

of high-quality vegetable and industrial oil. 9 RAPD primers, 6 AFLP primer combinations and 12 agro-morphological traits were used to assess the genetic diversity of 20 accessions of saf flower representing global germplasm variability. Jacquards’ similarity coef ficient were used to understanding the genetic relationships among ccessions, for AFLP and RAPD markers and Euclidian similarity coe...

متن کامل

Systematic Reviews and Meta- and Pooled Analyses Predicting Risk of Type 2 Diabetes Mellitus with Genetic Risk Models on the Basis of Established Genome-wide Association Markers: A Systematic Review

This study aimed to evaluate the predictive performance of genetic risk models based on risk loci identified and/ or confirmed in genome-wide association studies for type 2 diabetes mellitus. A systematic literature search was conducted in the PubMed/MEDLINE and EMBASE databases through April 13, 2012, and published data relevant to the prediction of type 2 diabetes based on genome-wide associa...

متن کامل

بررسی اثر ناسازگاری ماتریس های واریانس- کواریانس در شاخص انتخاب

In selection index procedure, phenotype and genetic (co)variance matrices of traits are used for calculating different genetic parameters like index coefficients, index variance, genetic gain in selection goal and selection accuracy. Sometimes, it is possible that these matrices become inconsistent or they are not positive, nor definite. In the current study, for investigation of the effect of ...

متن کامل

Morphological, Molecular and Phytochemical Variation in Some Thyme Genotypes

Thyme is an important medicinal plant in cosmetic, pharmaceutical and food industries. The first step for breeding of thyme is evaluating of genetic variation and relationship between thyme’s accessions. Therefore, the objective of this study was to evaluate morphology, chemical and molecular variation of 13 accessions of Thyme medicinal plant. ANOVA showed significant differences between acces...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2018